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Maps , chromosome location of genes and other molecular items

Genes , alleles, annotated genome, proteins, their function and expression patterns.

Genome Annotations & Sequences , clones, cDNAs, maps and bulk sequence data

Aberrations , chromosomal deficiencies, duplications and other rearrangements.

Transposons , transgene constructs and insertions

Anatomy & Images including gene expression.

Stocks with specific alleles and aberrations

References to research literature.

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FlyBase Documents

published by commercial publishers

Documents
  • R.A. Drysdale, M.A. Crosby and the FlyBase Consortium, 2005. FlyBase : Genes and gene models. Nuc. Acid Res., 33: D390-D395
    pdf [ 1 Mb, 10-Jan-05]
    Reproduced with permission from NAR Online

  • Genome Annotation, 2002
    • CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin and SE Lewis. 2002.
      An integrated computational pipeline and database to support whole-genome sequence annotation.
      Genome Biology, 3:research0081 [html] [PDF]
    • SE Lewis, SMJ Searle, N Harris, M Gibson, V Iyer, J Richter, C Wiel, L Bayraktaroglu, E Birney, MA Crosby, JS Kaminker, BB Matthews, SE Prochnik, CD Smith, JL Tupy, GM Rubin, S Misra, CJ Mungall and ME Clamp. 2002.
      Apollo: a sequence annotation editor.
      Genome Biology, 3:research0082 [html] [PDF]
    • S Misra, MA Crosby, CJ Mungall, BB Matthews, KS Campbell, P Hradecky, Y Huang, JS Kaminker, GH Millburn, SE Prochnik, CD Smith, JL Tupy, EJ Whitfield, L Bayraktaroglu, BP Berman, BR Bettencourt, SE Celniker, ADNJ de Grey, RA Drysdale, NL Harris, J Richter, S Russo, AJ Schroeder, SQ Shu, M Stapleton, C Yamada, M Ashburner, WM Gelbart, GM Rubin and SE Lewis. 2002.
      Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
      Genome Biology, 3:research0083 [html] [PDF]
  • The FlyBase Consortium, 2003. The FlyBase Database of the Drosophila Genome Projects and community literature. Nuc. Acid Res., 31:172--175
    pdf [ 62 kb] .. html [ 21 kb, 16-Dec-03]
    Reproduced with permission from NAR Online

  • Rachel Drysdale, 2003. The Drosophila melanogaster genome sequencing and annotation projects: A status report. Briefings in Functional Genomics and Proteomics, 2(2): 128--134.
    pdf [ 100 kb, 26-Jul-03]
    Reproduced with permission from Briefings in Functional Genomics and Proteomics

  • The FlyBase Consortium, 2002. The FlyBase Database of the Drosophila Genome Projects and community literature. Nuc. Acid Res., 30:106-108
    pdf [ 67 kb] .. html [ 20 kb, 15-Apr-02]
    Reproduced with permission from NAR Online

  • Rachel Drysdale, 2001. Phenotypic data in FlyBase. Briefings in Bioinformatics, 2(1): 68-80
    pdf [ 476 kb, 28-Mar-01]
    Reproduced with permission from Briefings in Bioinformatics

  • The FlyBase Consortium, 1999. The FlyBase Database of the Drosophila Genome Projects and community literature. Nuc. Acid Res., 27:85-88
    pdf [ 34 kb] .. html [ 29 kb, 10-Feb-99]
    Reproduced with permission from NAR Online

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