FlyBase: Genome Sequence Download

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FlyBase Genome Sequence Download

NOTE: Files downloaded from this page will need to be uncompressed using WinZip (PC) or Stuffit Expander (Mac) or Gunzip (Unix)

FTP Site:

Obtain the Complete Annotations and their Supporting Evidence (GAME XML format) Via FTP

Click [HERE] for our GAME XML DTD.

Obtain the Annotations (GFF format) Via FTP
Click [HERE] for more information about the GFF format.

Obtain the Annotation Sequences (FASTA format) Via FTP

For alternative ways to browse and query the Drosophila genome data see-

Drosophila Genome Overview .. Browse genomic sequence maps by chromosome arm

Annotation Query to perform complex queries and search by gene functions

For more information, please see the Release sequence and annotation notes.

Incremental updates (e.g Release 3.1) reflect changes in the annotations, NOT the genomic sequence

For other datasets also see:

Transposon Project Homepage

Affymetrix Format Oligo Mapping to Release 3 (FTP site)

Other FlyBase Downloads

FlyBase is a comprehensive database for information on the genetics and molecular biology of Drosophila. It includes data from the Drosophila Genome Projects and data curated from the literature. FlyBase is a joint project with the Berkeley Drosophila Genome Project.

Send comments to us at flybase-help AT morgan.harvard.edu

Select the Sequence Format, Datatype and Sequence Region below and then click on a Download button to download sequence for the selected region.



Sequence Format
FastA	GFF

Gene Features	Misc Features

Annotation +/- 2000bp	Transcript	Peptide	Pseudo Gene
Transposable Element	CDS	misc RNA	tRNA
	5' UTR	3' UTR	Intron
	Protein-coding Gene

Sequence Region		Last Updated: Aug 2004

X Euchromatin
2L			2R
3L			3R
4