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Drosophila Genomes Annotation & Sequences

D. melanogaster Features/Maps: Release 4.3, Mar-03 and data changes
D. melanogaster heterochromatin Features/Maps: Release 3.2 Jan-05
D. pseudoobscura Features/Maps: Release 2.0, Nov-11
Reports: Release 4.3, Mar-03
Primary data updated 08-Mar-2006
Annotated genes and genome data, from the FlyBase Chado Annotation Database

Search      [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Annotation search

Fly BLAST .. Sequence similarity search of Drosophila genomes

Batch download by ID .. enter a list of FlyBase IDs for reports in one batch, in various formats, including spreadsheet tables, genome sequence, and selected fields.

Search BDGP EST and DGC project cDNAs

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GBrowse .. Generic Genome Browser for Annotated Genomes

D. melanogaster
D. pseudoobscura

Apollo .. Genome Annotation and Curation Tool

All Annotation reports

Protein Domain .. Predicted proteins grouped by InterPro domain by EBI

Drosophila Gene Collection (DGC)

Data      [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Genome data by FTP and Rsync
FTP Chooser for Drosophila Genomic Sequence Download
ftp://flybase.net/genomes/ OR rsync://flybase.net/flybaseftp/genomes/

genomes/Drosophila_melanogaster/current/

fasta/ .. DNA and protein sequences
gff/ .. annotation features in GFF v.3 format
pgsql/ .. Postgres Chado database dump
xml-game/ .. annotation features in GAME XML
(GAME schema in RELAX-NG txt [ 27 kb, 27-Jan-2005])

genomes/Drosophila_pseudoobscura/current/

fasta/ .. DNA and protein sequences
gff/ .. annotation features in GFF v.3 format
pgsql/ .. Postgres Chado database dump

Other Sequence data: ftp://flybase.net/flybase/seqs/ or by http: seqs/
Other Sequence data at BDGP: http://www.fruitfly.org/sequence/download.html
Archived Genomic clones and sequences (BACs, P1s, cosmids, YACs, STS, BDGP P insertions)
BDGP Drosophila Gene Collection cDNA clones
Release 1.0 txt [25-Jul-2001] .. Release 2.0 txt [22-Aug-2003]
FlyBase Gene - DGC association table (DGC_FBgn.txt) txt [26-Mar-2004]

Genome Projects      [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

D. melanogaster Berkeley Drosophila Genome Project (BDGP)
D. pseudoobscura The Drosophila Genome Project at the HGSC, Baylor College of Medicine
D. pseudoobscura x D. melanogaster Whole Genome Comparative Analysis at LBL Berkeley Genome Pipeline

Documents      [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Current Release Notes

Annotation Release 4 Notes .. 4.0 Data Notes .. 4.1 Data Notes

Annotation Release 3 Notes .. 3.2 Update

Genomic Clones and STSs Section

Drosophila Resources--obtaining clones

Send comments to us at flybase-help AT morgan.harvard.edu
Other files

dpse_release2.0 html [ 7 kb, 11-Nov-05]
dicistronic_info txt [ 19 kb, 14-Sep-05]
feature_table-summary txt [ 21 kb, 14-Sep-05]
dpse_release1.04 txt [ 4 kb, 02-Jun-05]
dmel_release4.1 txt [ 10 kb, 20-Feb-05]
r4_3_changes txt [ 15 kb, 20-Mar-06]
dmel_prot_dpse txt [ 220 kb, 19-Jan-05]
dmel-release4-notes html [ 51 kb, 20-Mar-06]
dpse-release1 html [1016 b, 15-Nov-04]
dmel-release4 html [ 1 kb, 17-Dec-04]
dmel_release4.0 txt [ 7 kb, 22-Nov-04]
gff3 html [ 30 kb, 14-Nov-04]
dpse_release1.0 txt [ 5 kb, 10-Nov-04]
dmel_het_release3.2 txt [ 2 kb, 14-Nov-04]
dmel_release3.2.2 txt [ 6 kb, 25-Oct-04]
dmel_release3.2.1 txt [ 10 kb, 06-Aug-04]
dmel_release3.2.0 shtml [ 439 b] .. txt [ 8 kb, 27-Mar-04]
dmel_het_release3.2b2 txt [ 2 kb, 14-Feb-05]
gff html [ 25 kb, 23-Feb-04]
dmel_release3.1.0d txt [ 6 kb, 01-Jan-04]
r4_2_changes txt [ 27 kb, 20-Mar-06]
r4.1 txt [ 14 kb, 18-May-05]
release html [ 51 kb, 20-Mar-06]
FBan acode [ 108 Mb, 08-Mar-06]